IL_5V7Q_075
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCGAAG*CGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 5V7Q|1|A|G|2035, 5V7Q|1|A|U|2050, 5V7Q|1|A|U|2054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_075 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.1359
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5V7Q|1|A|U|2032
5V7Q|1|A|G|2033
5V7Q|1|A|C|2034
5V7Q|1|A|G|2035
5V7Q|1|A|A|2036
5V7Q|1|A|A|2037
5V7Q|1|A|G|2038
*
5V7Q|1|A|C|2047
5V7Q|1|A|G|2048
5V7Q|1|A|A|2049
5V7Q|1|A|U|2050
5V7Q|1|A|G|2051
5V7Q|1|A|U|2052
5V7Q|1|A|A|2053
5V7Q|1|A|U|2054
5V7Q|1|A|A|2055
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: