IL_5V7Q_099

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5V7Q|1|A|A|2810, 5V7Q|1|A|C|2811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_099 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1706

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

5V7Q|1|A|C|2750
5V7Q|1|A|G|2751
*
5V7Q|1|A|C|2809
5V7Q|1|A|A|2810
5V7Q|1|A|C|2811
5V7Q|1|A|G|2812

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13