IL_5V7Q_116
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGCAAGUAG*CGAACGCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_116 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.2919
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5V7Q|1|A|C|239
5V7Q|1|A|G|240
5V7Q|1|A|C|241
5V7Q|1|A|A|242
5V7Q|1|A|A|243
5V7Q|1|A|G|244
5V7Q|1|A|U|245
5V7Q|1|A|A|246
5V7Q|1|A|G|247
*
5V7Q|1|A|C|255
5V7Q|1|A|G|256
5V7Q|1|A|A|257
5V7Q|1|A|A|258
5V7Q|1|A|C|259
5V7Q|1|A|G|260
5V7Q|1|A|C|261
5V7Q|1|A|G|262
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
Coloring options: