IL_5V7Q_119
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAGGG*UCUG
- Length
- 9 nucleotides
- Bulged bases
- 5V7Q|1|A|G|694
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_119 not in the Motif Atlas
- Geometric match to IL_422D_001
- Geometric discrepancy: 0.262
- The information below is about IL_422D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5V7Q|1|A|C|691
5V7Q|1|A|A|692
5V7Q|1|A|G|693
5V7Q|1|A|G|694
5V7Q|1|A|G|695
*
5V7Q|1|A|U|794
5V7Q|1|A|C|795
5V7Q|1|A|U|796
5V7Q|1|A|G|797
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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