IL_5V7Q_132

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAG*UGAUCC

Length

11 nucleotides

Bulged bases

5V7Q|1|A|U|1791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_132 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3622

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5V7Q|1|A|G|1674
5V7Q|1|A|G|1675
5V7Q|1|A|U|1676
5V7Q|1|A|A|1677
5V7Q|1|A|G|1678
*
5V7Q|1|A|U|1788
5V7Q|1|A|G|1789
5V7Q|1|A|A|1790
5V7Q|1|A|U|1791
5V7Q|1|A|C|1792
5V7Q|1|A|C|1793

Current chains

Chain A

23S rRNA

Nearby chains