IL_5V7Q_133

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_133 not in the Motif Atlas

Geometric match to IL_8GLP_291

Geometric discrepancy: 0.3551

The information below is about IL_8GLP_291

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46203.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5V7Q|1|A|C|1711
5V7Q|1|A|G|1712
5V7Q|1|A|G|1713
5V7Q|1|A|U|1714
5V7Q|1|A|A|1715
5V7Q|1|A|G|1716
*
5V7Q|1|A|U|1752
5V7Q|1|A|G|1753
5V7Q|1|A|A|1754
5V7Q|1|A|G|1755
5V7Q|1|A|A|1756
5V7Q|1|A|G|1757

Current chains

Chain A

23S rRNA

Nearby chains