IL_5V93_022

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_022 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2431

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5V93|1|A|U|832
5V93|1|A|G|833
5V93|1|A|A|834
5V93|1|A|A|835
5V93|1|A|G|836
5V93|1|A|C|837
*
5V93|1|A|G|852
5V93|1|A|U|853
5V93|1|A|G|854
5V93|1|A|G|855
5V93|1|A|A|856
5V93|1|A|G|857

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2