IL_5V93_128

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5V93|1|a|A|523, 5V93|1|a|U|525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_128 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2549

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5V93|1|a|G|506
5V93|1|a|U|507
5V93|1|a|G|508
5V93|1|a|C|509
5V93|1|a|C|510
5V93|1|a|A|511
5V93|1|a|G|512
*
5V93|1|a|C|519
5V93|1|a|G|520
5V93|1|a|G|521
5V93|1|a|U|522
5V93|1|a|A|523
5V93|1|a|A|524
5V93|1|a|U|525
5V93|1|a|A|526
5V93|1|a|C|527

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain l

30S ribosomal protein S12