IL_5V93_204

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGAG*CAAGAUCAG

Length

14 nucleotides

Bulged bases

5V93|1|A|G|3015, 5V93|1|A|C|3018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_204 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.2792

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5V93|1|A|U|2874
5V93|1|A|U|2875
5V93|1|A|G|2876
5V93|1|A|A|2877
5V93|1|A|G|2878
*
5V93|1|A|C|3012
5V93|1|A|A|3013
5V93|1|A|A|3014
5V93|1|A|G|3015
5V93|1|A|A|3016
5V93|1|A|U|3017
5V93|1|A|C|3018
5V93|1|A|A|3019
5V93|1|A|G|3020

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13