IL_5V93_226
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_226 not in the Motif Atlas
- Homologous match to IL_9DFE_114
- Geometric discrepancy: 0.1722
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5V93|1|B|C|70
5V93|1|B|G|71
5V93|1|B|A|72
5V93|1|B|U|73
5V93|1|B|G|74
5V93|1|B|A|75
5V93|1|B|U|76
5V93|1|B|A|77
5V93|1|B|C|78
*
5V93|1|B|G|93
5V93|1|B|A|94
5V93|1|B|A|95
5V93|1|B|A|96
5V93|1|B|A|97
5V93|1|B|G|98
5V93|1|B|U|99
5V93|1|B|A|100
5V93|1|B|G|101
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L30
Coloring options: