IL_5VH8_058

3D structure

PDB id

5VH8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and dynamics of RNA repeat expansions that cause Huntington's Disease and myotonic dystrophy type 1

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VH8_058 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1646

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5VH8|20|A|C|4
5VH8|20|A|U|5
5VH8|20|A|G|6
*
5VH8|20|B|C|25
5VH8|20|B|U|26
5VH8|20|B|G|27

Current chains

Chain A

RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')

Chain B

RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')

Nearby chains