IL_5VP2_007
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_007 not in the Motif Atlas
- Homologous match to IL_9DFE_007
- Geometric discrepancy: 0.0654
- The information below is about IL_9DFE_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5VP2|1|1A|U|228
5VP2|1|1A|G|229
5VP2|1|1A|A|230
5VP2|1|1A|G|231
5VP2|1|1A|U|232
5VP2|1|1A|A|233
5VP2|1|1A|G|234
*
5VP2|1|1A|C|242
5VP2|1|1A|G|243
5VP2|1|1A|A|244
5VP2|1|1A|A|245
5VP2|1|1A|A|246
5VP2|1|1A|G|247
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
Coloring options: