IL_5VP2_011

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

5VP2|1|1A|G|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_011 not in the Motif Atlas

Homologous match to IL_9DFE_010

Geometric discrepancy: 0.1364

The information below is about IL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5VP2|1|1A|C|312
5VP2|1|1A|A|313
5VP2|1|1A|G|314
*
5VP2|1|1A|U|374
5VP2|1|1A|G|375
5VP2|1|1A|G|376
5VP2|1|1A|G|377

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains