IL_5VP2_047
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_047 not in the Motif Atlas
- Homologous match to IL_9DFE_048
- Geometric discrepancy: 0.055
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5VP2|1|1A|A|1308
5VP2|1|1A|U|1309
5VP2|1|1A|G|1310
5VP2|1|1A|A|1311
5VP2|1|1A|G|1312
5VP2|1|1A|U|1313
5VP2|1|1A|A|1314
5VP2|1|1A|A|1315
*
5VP2|1|1A|U|2033
5VP2|1|1A|G|2034
5VP2|1|1A|A|2035
5VP2|1|1A|A|2036
5VP2|1|1A|A|2037
5VP2|1|1A|U|2038
5VP2|1|1A|U|2039
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
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