IL_5VP2_092
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_092 not in the Motif Atlas
- Homologous match to IL_9DFE_094
- Geometric discrepancy: 0.0606
- The information below is about IL_9DFE_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
5VP2|1|1A|A|2471
5VP2|1|1A|U|2472
5VP2|1|1A|C|2473
*
5VP2|1|1A|G|2501
5VP2|1|1A|G|2502
5VP2|1|1A|U|2503
5VP2|1|1A|U|2504
5VP2|1|1A|U|2505
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1w
- Transfer RNA; tRNA
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