IL_5VP2_101
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_101 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.0795
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5VP2|1|1A|C|2664
5VP2|1|1A|U|2665
5VP2|1|1A|A|2666
5VP2|1|1A|G|2667
5VP2|1|1A|U|2668
5VP2|1|1A|A|2669
5VP2|1|1A|C|2670
*
5VP2|1|1A|G|2675
5VP2|1|1A|G|2676
5VP2|1|1A|A|2677
5VP2|1|1A|C|2678
5VP2|1|1A|C|2679
5VP2|1|1A|G|2680
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1H
- 50S ribosomal protein L6
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