IL_5VP2_139
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_139 not in the Motif Atlas
- Homologous match to IL_6CZR_408
- Geometric discrepancy: 0.1972
- The information below is about IL_6CZR_408
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5VP2|1|1a|U|605
5VP2|1|1a|G|606
5VP2|1|1a|A|607
5VP2|1|1a|A|608
5VP2|1|1a|A|609
5VP2|1|1a|G|610
5VP2|1|1a|A|611
5VP2|1|1a|C|612
*
5VP2|1|1a|G|628
5VP2|1|1a|G|629
5VP2|1|1a|G|630
5VP2|1|1a|G|631
5VP2|1|1a|A|632
5VP2|1|1a|G|633
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1h
- 30S ribosomal protein S8
- Chain 1p
- 30S ribosomal protein S16
Coloring options: