IL_5VP2_303
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5VP2|1|2a|A|532, 5VP2|1|2a|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_303 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2024
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5VP2|1|2a|G|515
5VP2|1|2a|PSU|516
5VP2|1|2a|G|517
5VP2|1|2a|C|518
5VP2|1|2a|C|519
5VP2|1|2a|A|520
5VP2|1|2a|G|521
*
5VP2|1|2a|C|528
5VP2|1|2a|G|529
5VP2|1|2a|G|530
5VP2|1|2a|U|531
5VP2|1|2a|A|532
5VP2|1|2a|A|533
5VP2|1|2a|U|534
5VP2|1|2a|A|535
5VP2|1|2a|C|536
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2d
- 30S ribosomal protein S4
- Chain 2l
- 30S ribosomal protein S12
- Chain 2v
- mRNA
- Chain 2w
- Transfer RNA; tRNA
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