IL_5VP2_354

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5VP2|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_354 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1169

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5VP2|1|2A|C|844
5VP2|1|2A|G|845
5VP2|1|2A|C|846
5VP2|1|2A|U|847
5VP2|1|2A|G|848
5VP2|1|2A|A|849
5VP2|1|2A|C|850
*
5VP2|1|2A|G|927
5VP2|1|2A|G|928
5VP2|1|2A|U|930
5VP2|1|2A|G|931
5VP2|1|2A|G|932
5VP2|1|2A|A|933
5VP2|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30