IL_5VPO_021

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5VPO|1|QA|A|532, 5VPO|1|QA|U|534, 5VPO|1|QA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1528

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5VPO|1|QA|G|515
5VPO|1|QA|U|516
5VPO|1|QA|G|517
5VPO|1|QA|C|518
5VPO|1|QA|C|519
5VPO|1|QA|A|520
5VPO|1|QA|G|521
*
5VPO|1|QA|C|528
5VPO|1|QA|G|529
5VPO|1|QA|G|530
5VPO|1|QA|U|531
5VPO|1|QA|A|532
5VPO|1|QA|A|533
5VPO|1|QA|U|534
5VPO|1|QA|A|535
5VPO|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12