3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5VPP|1|QA|A|532, 5VPP|1|QA|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPP_021 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2012
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5VPP|1|QA|G|515
5VPP|1|QA|U|516
5VPP|1|QA|G|517
5VPP|1|QA|C|518
5VPP|1|QA|C|519
5VPP|1|QA|A|520
5VPP|1|QA|G|521
*
5VPP|1|QA|C|528
5VPP|1|QA|G|529
5VPP|1|QA|G|530
5VPP|1|QA|U|531
5VPP|1|QA|A|532
5VPP|1|QA|A|533
5VPP|1|QA|U|534
5VPP|1|QA|A|535
5VPP|1|QA|C|536

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QC
30S ribosomal protein S3
Chain QL
30S ribosomal protein S12

Coloring options:


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