IL_5VPP_108

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5VPP|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_108 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1469

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5VPP|1|RA|C|1208
5VPP|1|RA|G|1209
5VPP|1|RA|A|1210
5VPP|1|RA|U|1211
5VPP|1|RA|G|1212
5VPP|1|RA|A|1213
5VPP|1|RA|A|1214
5VPP|1|RA|G|1215
*
5VPP|1|RA|U|1234
5VPP|1|RA|G|1235
5VPP|1|RA|G|1236
5VPP|1|RA|A|1237
5VPP|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20