IL_5VPP_181
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGG*UCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VPP_181 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.3921
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5VPP|1|XA|C|67
5VPP|1|XA|G|68
5VPP|1|XA|G|68|||A
5VPP|1|XA|G|68|||B
*
5VPP|1|XA|U|68|||X
5VPP|1|XA|C|68|||Y
5VPP|1|XA|A|101
5VPP|1|XA|G|102
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XT
- 30S ribosomal protein S20
Coloring options: