IL_5VPP_367

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

5VPP|1|RA|C|2111, 5VPP|1|RA|G|2112, 5VPP|1|RA|U|2113, 5VPP|1|RA|A|2114, 5VPP|1|RA|U|2118, 5VPP|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPP_367 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3021

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5VPP|1|RA|C|2108
5VPP|1|RA|U|2109
5VPP|1|RA|G|2110
5VPP|1|RA|C|2111
5VPP|1|RA|G|2112
5VPP|1|RA|U|2113
5VPP|1|RA|A|2114
5VPP|1|RA|G|2115
5VPP|1|RA|G|2116
5VPP|1|RA|A|2117
5VPP|1|RA|U|2118
5VPP|1|RA|A|2119
5VPP|1|RA|G|2120
*
5VPP|1|RA|C|2178
5VPP|1|RA|C|2179
5VPP|1|RA|U|2180
5VPP|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA