IL_5VYC_009

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_009 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.2229

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5VYC|1|i1|U|110
5VYC|1|i1|A|111
5VYC|1|i1|U|112
*
5VYC|1|i1|A|349
5VYC|1|i1|C|350
5VYC|1|i1|G|351

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain E1

40S ribosomal protein S4, X isoform

Chain I1

40S ribosomal protein S8

Chain L1

40S ribosomal protein S11