IL_5VYC_061

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_061 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1423

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5VYC|1|i1|G|1702
5VYC|1|i1|C|1703
5VYC|1|i1|C|1704
5VYC|1|i1|C|1705
*
5VYC|1|i1|G|1829
5VYC|1|i1|U|1830
5VYC|1|i1|A|1831
5VYC|1|i1|A|1832
5VYC|1|i1|C|1833

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain j1

60S ribosomal protein L41

Chain l1

Density-regulated protein