IL_5VYC_101

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5VYC|1|i2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_101 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2322

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5VYC|1|i2|G|925
5VYC|1|i2|A|926
5VYC|1|i2|C|927
*
5VYC|1|i2|G|1014
5VYC|1|i2|U|1015
5VYC|1|i2|U|1016
5VYC|1|i2|U|1017

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain N2

40S ribosomal protein S13

Chain b2

40S ribosomal protein S27