IL_5VYC_112
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_112 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1582
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i2|G|1168
5VYC|1|i2|G|1169
5VYC|1|i2|A|1170
5VYC|1|i2|G|1171
5VYC|1|i2|U|1172
5VYC|1|i2|A|1173
5VYC|1|i2|U|1174
5VYC|1|i2|G|1175
*
5VYC|1|i2|U|1186
5VYC|1|i2|G|1187
5VYC|1|i2|A|1188
5VYC|1|i2|A|1189
5VYC|1|i2|A|1190
5VYC|1|i2|C|1191
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain X2
- 40S ribosomal protein S23
- Chain j2
- 60S ribosomal protein L41
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