IL_5VYC_134

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_134 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1138

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5VYC|1|i2|C|1717
5VYC|1|i2|G|1718
5VYC|1|i2|A|1719
5VYC|1|i2|U|1720
*
5VYC|1|i2|A|1813
5VYC|1|i2|G|1814
5VYC|1|i2|A|1815
5VYC|1|i2|G|1816

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain j2

60S ribosomal protein L41