IL_5VYC_139

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_139 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2024

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5VYC|1|i2|C|1742
5VYC|1|i2|G|1743
5VYC|1|i2|G|1744
5VYC|1|i2|A|1745
5VYC|1|i2|U|1746
*
5VYC|1|i2|A|1788
5VYC|1|i2|G|1789
5VYC|1|i2|A|1790
5VYC|1|i2|A|1791
5VYC|1|i2|G|1792

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6

Chain I2

40S ribosomal protein S8