IL_5VYC_143
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 5VYC|1|i3|U|44, 5VYC|1|i3|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_143 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.1372
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i3|G|41
5VYC|1|i3|A|42
5VYC|1|i3|U|43
5VYC|1|i3|U|44
5VYC|1|i3|A|45
5VYC|1|i3|A|46
5VYC|1|i3|G|47
*
5VYC|1|i3|C|479
5VYC|1|i3|G|480
5VYC|1|i3|C|481
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain I3
- 40S ribosomal protein S8
- Chain X3
- 40S ribosomal protein S23
Coloring options: