IL_5VYC_159

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_159 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1962

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5VYC|1|i3|C|491
5VYC|1|i3|C|492
5VYC|1|i3|A|493
5VYC|1|i3|C|494
5VYC|1|i3|U|495
*
5VYC|1|i3|A|508
5VYC|1|i3|G|509

Current chains

Chain i3

Human 18S ribosomal RNA

Nearby chains

Chain E3

40S ribosomal protein S4, X isoform

Chain J3

40S ribosomal protein S9

Chain Y3

40S ribosomal protein S24