IL_5VYC_245
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5VYC|1|i4|C|1153, 5VYC|1|i4|U|1155, 5VYC|1|i4|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_245 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1571
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i4|C|1091
5VYC|1|i4|G|1092
5VYC|1|i4|A|1093
*
5VYC|1|i4|U|1152
5VYC|1|i4|C|1153
5VYC|1|i4|U|1154
5VYC|1|i4|U|1155
5VYC|1|i4|U|1156
5VYC|1|i4|G|1157
5VYC|1|i4|G|1158
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain C4
- 40S ribosomal protein S2
- Chain L4
- 40S ribosomal protein S11
- Chain N4
- 40S ribosomal protein S13
- Chain W4
- 40S ribosomal protein S15a
- Chain X4
- 40S ribosomal protein S23
- Chain b4
- 40S ribosomal protein S27
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