IL_5VYC_273

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UUAG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_273 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.229

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5VYC|1|i4|U|1729
5VYC|1|i4|U|1730
5VYC|1|i4|A|1731
5VYC|1|i4|G|1732
*
5VYC|1|i4|C|1802
5VYC|1|i4|U|1803
5VYC|1|i4|U|1804
5VYC|1|i4|G|1805

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain I4

40S ribosomal protein S8

Chain k2

Malignant T-cell-amplified sequence 1