IL_5VYC_311
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 5VYC|1|i5|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_311 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2428
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5VYC|1|i5|G|952
5VYC|1|i5|C|953
5VYC|1|i5|U|954
5VYC|1|i5|A|955
5VYC|1|i5|G|956
*
5VYC|1|i5|C|967
5VYC|1|i5|U|968
5VYC|1|i5|U|969
5VYC|1|i5|G|970
5VYC|1|i5|G|971
5VYC|1|i5|A|972
5VYC|1|i5|C|973
5VYC|1|i5|C|974
Current chains
- Chain i5
- Human 18S ribosomal RNA
Nearby chains
- Chain B5
- 40S ribosomal protein S3a
- Chain I2
- 40S ribosomal protein S8
- Chain L2
- 40S ribosomal protein S11
- Chain O5
- 40S ribosomal protein S14
- Chain k5
- Malignant T-cell-amplified sequence 1
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