IL_5VYC_387
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_387 not in the Motif Atlas
- Geometric match to IL_4LFB_054
- Geometric discrepancy: 0.3604
- The information below is about IL_4LFB_054
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 61
Unit IDs
5VYC|1|i6|G|1108
5VYC|1|i6|C|1109
5VYC|1|i6|G|1110
*
5VYC|1|i6|C|1123
5VYC|1|i6|C|1124
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain A6
- 40S ribosomal protein SA
- Chain B6
- 40S ribosomal protein S3a
- Chain R6
- 40S ribosomal protein S17
- Chain b6
- 40S ribosomal protein S27
Coloring options: