IL_5VYC_405

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5VYC|1|i6|C|1701, 5VYC|1|i6|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_405 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.3003

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5VYC|1|i6|C|1700
5VYC|1|i6|C|1701
5VYC|1|i6|G|1702
*
5VYC|1|i6|C|1833
5VYC|1|i6|A|1834
5VYC|1|i6|A|1835
5VYC|1|i6|G|1836

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain a6

40S ribosomal protein S26