IL_5VYC_413

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_413 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1617

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5VYC|1|i6|U|1733
5VYC|1|i6|G|1734
5VYC|1|i6|A|1735
5VYC|1|i6|G|1736
*
5VYC|1|i6|C|1798
5VYC|1|i6|G|1799
5VYC|1|i6|A|1800
5VYC|1|i6|A|1801

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain G6

40S ribosomal protein S6

Chain I6

40S ribosomal protein S8