IL_5VYC_421

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_421 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.1587

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5VYC|1|i1|G|928
5VYC|1|i1|G|929
5VYC|1|i1|C|930
5VYC|1|i1|C|931
*
5VYC|1|i1|G|1010
5VYC|1|i1|A|1011
5VYC|1|i1|A|1012
5VYC|1|i1|U|1013

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain B1

40S ribosomal protein S3a

Chain N1

40S ribosomal protein S13

Chain b1

40S ribosomal protein S27