IL_5VYC_500

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5VYC|1|i2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_500 not in the Motif Atlas

Geometric match to IL_8C3A_424

Geometric discrepancy: 0.288

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

5VYC|1|i2|U|487
5VYC|1|i2|U|488
5VYC|1|i2|A|489
*
5VYC|1|i2|U|511
5VYC|1|i2|A|512

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4, X isoform

Chain J2

40S ribosomal protein S9

Chain Y2

40S ribosomal protein S24