IL_5VYC_501
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5VYC|1|i2|A|628, 5VYC|1|i2|U|630, 5VYC|1|i2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_501 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.2489
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i2|G|611
5VYC|1|i2|U|612
5VYC|1|i2|G|613
5VYC|1|i2|C|614
5VYC|1|i2|C|615
5VYC|1|i2|A|616
5VYC|1|i2|G|617
*
5VYC|1|i2|C|624
5VYC|1|i2|G|625
5VYC|1|i2|G|626
5VYC|1|i2|U|627
5VYC|1|i2|A|628
5VYC|1|i2|A|629
5VYC|1|i2|U|630
5VYC|1|i2|U|631
5VYC|1|i2|C|632
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain D2
- 40S ribosomal protein S3
- Chain X2
- 40S ribosomal protein S23
- Chain e2
- 40S ribosomal protein S30
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