IL_5VYC_518

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_518 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.2236

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

5VYC|1|i5|A|802
5VYC|1|i5|C|803
*
5VYC|1|i5|G|860
5VYC|1|i5|A|861
5VYC|1|i5|A|862
5VYC|1|i5|U|863

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain H5

40S ribosomal protein S7

Chain L5

40S ribosomal protein S11

Chain W5

40S ribosomal protein S15a