IL_5W4K_305

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5W4K|1|2a|A|532, 5W4K|1|2a|U|534, 5W4K|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_305 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2115

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5W4K|1|2a|G|515
5W4K|1|2a|PSU|516
5W4K|1|2a|G|517
5W4K|1|2a|C|518
5W4K|1|2a|C|519
5W4K|1|2a|A|520
5W4K|1|2a|G|521
*
5W4K|1|2a|C|528
5W4K|1|2a|G|529
5W4K|1|2a|G|530
5W4K|1|2a|U|531
5W4K|1|2a|A|532
5W4K|1|2a|A|533
5W4K|1|2a|U|534
5W4K|1|2a|A|535
5W4K|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA

Chain 2w

Transfer RNA; tRNA