IL_5WDT_064

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5WDT|1|A|A|1801, 5WDT|1|A|C|1816, 5WDT|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_064 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0738

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5WDT|1|A|U|1798
5WDT|1|A|G|1799
5WDT|1|A|C|1800
5WDT|1|A|A|1801
5WDT|1|A|A|1802
5WDT|1|A|A|1803
5WDT|1|A|C|1804
*
5WDT|1|A|G|1813
5WDT|1|A|G|1814
5WDT|1|A|A|1815
5WDT|1|A|C|1816
5WDT|1|A|G|1817
5WDT|1|A|U|1818
5WDT|1|A|A|1819
5WDT|1|A|U|1820
5WDT|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA