IL_5WDT_068

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_068 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.2954

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5WDT|1|A|U|1864
5WDT|1|A|U|1865
5WDT|1|A|A|1866
5WDT|1|A|G|1867
5WDT|1|A|C|1868
*
5WDT|1|A|G|1873
5WDT|1|A|C|1874
5WDT|1|A|G|1875
5WDT|1|A|A|1876
5WDT|1|A|A|1877
5WDT|1|A|G|1878

Current chains

Chain A

23S rRNA

Nearby chains