IL_5WDT_132
3D structure
- PDB id
- 5WDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GppNHp
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5WDT|1|a|A|532, 5WDT|1|a|U|534, 5WDT|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WDT_132 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2376
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5WDT|1|a|G|515
5WDT|1|a|PSU|516
5WDT|1|a|G|517
5WDT|1|a|C|518
5WDT|1|a|C|519
5WDT|1|a|A|520
5WDT|1|a|G|521
*
5WDT|1|a|C|528
5WDT|1|a|G|529
5WDT|1|a|G|530
5WDT|1|a|U|531
5WDT|1|a|A|532
5WDT|1|a|A|533
5WDT|1|a|U|534
5WDT|1|a|A|535
5WDT|1|a|C|536
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain x
- mRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: