3D structure

PDB id
5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
5WDT|1|a|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WDT_137 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.1161
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

5WDT|1|a|U|605
5WDT|1|a|G|606
5WDT|1|a|A|607
5WDT|1|a|A|608
5WDT|1|a|A|609
5WDT|1|a|U|610
5WDT|1|a|C|611
5WDT|1|a|C|612
*
5WDT|1|a|G|628
5WDT|1|a|A|629
5WDT|1|a|A|630
5WDT|1|a|C|631
5WDT|1|a|U|632
5WDT|1|a|G|633

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain h
30S ribosomal protein S8
Chain p
30S ribosomal protein S16

Coloring options:


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