IL_5WE4_066

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5WE4|1|A|A|1801, 5WE4|1|A|C|1816, 5WE4|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0664

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5WE4|1|A|U|1798
5WE4|1|A|G|1799
5WE4|1|A|C|1800
5WE4|1|A|A|1801
5WE4|1|A|A|1802
5WE4|1|A|A|1803
5WE4|1|A|C|1804
*
5WE4|1|A|G|1813
5WE4|1|A|G|1814
5WE4|1|A|A|1815
5WE4|1|A|C|1816
5WE4|1|A|G|1817
5WE4|1|A|U|1818
5WE4|1|A|A|1819
5WE4|1|A|U|1820
5WE4|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA