3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_145 not in the Motif Atlas
Geometric match to IL_5J7L_034
Geometric discrepancy: 0.0795
The information below is about IL_5J7L_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5WE4|1|a|A|673
5WE4|1|a|G|674
5WE4|1|a|A|675
5WE4|1|a|A|676
5WE4|1|a|U|677
5WE4|1|a|U|678
*
5WE4|1|a|A|712
5WE4|1|a|G|713
5WE4|1|a|G|714
5WE4|1|a|A|715
5WE4|1|a|A|716
5WE4|1|a|U|717

Current chains

Chain a
16S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

Coloring options:


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