3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_174 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.1073
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

5WE4|1|a|A|1430
5WE4|1|a|A|1431
5WE4|1|a|G|1432
5WE4|1|a|A|1433
5WE4|1|a|A|1434
5WE4|1|a|G|1435
*
5WE4|1|a|C|1466
5WE4|1|a|C|1467
5WE4|1|a|A|1468
5WE4|1|a|C|1469
5WE4|1|a|U|1470

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain t
30S ribosomal protein S20

Coloring options:


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